Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  174 bits (442), Expect = 6e-48
 Identities = 102/274 (37%), Positives = 154/274 (56%), Gaps = 11/274 (4%)

Query: 43  EDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL 102
           ED  E    +   L A    +++     L + ++     ++  R   AAR  MI  NLRL
Sbjct: 685 EDKLERHAGAINRLQAQMQNINQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRL 744

Query: 103 VVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ 162
           V+ ++ +Y  RGL L DL++EGN+GL++AVEKFD  +GF+FSTYATWWIRQ I RA+ +Q
Sbjct: 745 VLSVANKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQ 804

Query: 163 TRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV--TKMLRLNERI 220
            R IR+P+HV + LN  +  ++ L+ +    P   E++L L  P   V   K + + E +
Sbjct: 805 ARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVENLKQILVMEPV 864

Query: 221 SSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFG 280
           +  D    G  D A +          PE    DDD   ++ + L  L  K+K+VL  RFG
Sbjct: 865 AEADHNTNGYVDWAAM---------SPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFG 915

Query: 281 LLGYEPSTLEEVGREINLTRERVRQIQVEGLRRL 314
           +      TLEEVG++ ++TRER+RQI+ + L++L
Sbjct: 916 INAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949