Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  141 bits (355), Expect = 2e-38
 Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 14/266 (5%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL  I   P+L  EEE   A+R    GD  A  R++ S+LRLV KI+  Y   GL + ++
Sbjct: 19  YLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVAKIAMGYRGYGLPMGEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+GL++AV++FDPERGFR +TYA WWIR  I+  +++    +++      K+L   
Sbjct: 79  ISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFN 138

Query: 180 LRTARELSQRLD----HEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR  +   Q +D    H     +IA +L  P  DV  M  RL+    S++ P+  DGD  
Sbjct: 139 LRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGE 198

Query: 235 LLDILPDSHNADPEFS---TQDDDIRESLLNW-LDELNPKQKEVLARRFGLLGYEPSTLE 290
             D L D  + D E +   +Q+   R +LL+  L  LN +++ +L +R   L  +P TLE
Sbjct: 199 WQDWLVDESD-DQETTLAESQEMGQRRALLSGALKSLNERERHILTQR--RLRDDPVTLE 255

Query: 291 EVGREINLTRERVRQIQVEGLRRLRE 316
           ++ +   ++RERVRQI+V    +L++
Sbjct: 256 DLSQHYGISRERVRQIEVRAFEKLQK 281