Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  139 bits (349), Expect = 1e-37
 Identities = 95/269 (35%), Positives = 153/269 (56%), Gaps = 12/269 (4%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL+EI   P+LT EEE + A+R    GD  A  R++ S+LRLV KI+  Y + GL + DL
Sbjct: 20  YLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLRLVAKIAMGYRHYGLPVSDL 79

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELNIY 179
           + EGN+GL++AV+KF+ +RGFR +TYA WWI+ +I   ++N    +++  +   K+L   
Sbjct: 80  VAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILNSWSLVKVGTVAAQKKLFFN 139

Query: 180 LRTAR-ELSQRLDHEPTPEE---IALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR  + +L    + + +PE+   IA +L     DV  M  RL    +S++ P+G D    
Sbjct: 140 LRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRRLAGPDASLNVPVGEDQSMD 199

Query: 235 LLDILPDSHNADPEF--STQDDDIRESLL-NWLDELNPKQKEVLARRFGLLGYEPSTLEE 291
            +D+L D  +   E   + ++  +   LL + L  L  +++ ++  R   L  EP TLEE
Sbjct: 200 RMDLLMDEGDNQEEVYAAHEEQSLGNRLLKDALSTLTERERHIITAR--RLRSEPVTLEE 257

Query: 292 VGREINLTRERVRQIQVEGLRRLREILVK 320
           +G E  ++RERVRQI+     +L+  + K
Sbjct: 258 LGGEYGVSRERVRQIENRAFEKLQTAVRK 286