Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., RNA polymerase sigma factor RpoD from Rhodopseudomonas palustris CGA009

 Score =  218 bits (555), Expect = 4e-61
 Identities = 101/225 (44%), Positives = 162/225 (72%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 460 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 519

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V
Sbjct: 520 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 579

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TP+G + D  L D + D +   P  +    ++RE+    L  L P+
Sbjct: 580 RKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPR 639

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           ++ VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 640 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 684



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 7   VTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEI 66
           V++ E+ + E+E  +  E D EL  D +LV V   +    ++ +   ++ D  +MYL E+
Sbjct: 87  VSEAEDTEAEEEEAKE-EADEEL--DNDLVEVTAKAVTETKKSEPGERTDDPVRMYLREM 143

Query: 67  GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL-VVKISRRYSNRG-LALLDLIE 122
           G   LL+ E E+  A+R   G EA    + ES L    + I R   N G + L D+I+
Sbjct: 144 GTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIID 201