Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., RNA polymerase sigma factor RpoH from Rhodopseudomonas palustris CGA009

 Score =  133 bits (335), Expect = 5e-36
 Identities = 88/265 (33%), Positives = 142/265 (53%), Gaps = 14/265 (5%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL+EI   P+L  ++E + A+R    GD  A  +++ S+LRLV KI+  Y   GL + ++
Sbjct: 19  YLAEIRKFPMLEPQQEYMLAKRWREHGDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV-VKELNIY 179
           + EGN+GL++AV++F+PE+GFR +TYA WWI+ +I+  ++     +++      K+L   
Sbjct: 79  VSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFN 138

Query: 180 LRTARELSQRLD----HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKA- 234
           LR A+     LD    H    + IA  L     DV  M R     +S++ PI  DG+   
Sbjct: 139 LRKAKSKISALDEGDLHPDQVKLIATRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGE 198

Query: 235 ----LLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290
               L+D  P       E   + D  R +L   +  LNP+++ +   R   L  EP TLE
Sbjct: 199 WQDWLVDQSPSQEAVMAEHE-ELDQRRAALNGAIQVLNPRERRIFEAR--RLADEPMTLE 255

Query: 291 EVGREINLTRERVRQIQVEGLRRLR 315
           ++  E  ++RERVRQI+V    +++
Sbjct: 256 DLASEFGVSRERVRQIEVRAFEKVQ 280