Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  132 bits (333), Expect = 8e-36
 Identities = 92/281 (32%), Positives = 153/281 (54%), Gaps = 24/281 (8%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRALRG-DEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL EI   PLL  EEE + A+R +   D A+  +M+ S+LRL  KI+  Y   GL   ++
Sbjct: 19  YLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRLAAKIAMGYRGYGLPQAEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELNIY 179
           I E N+GL++AV++FDPE+GFR +TYA WWIR +I+  ++     ++L      K+L   
Sbjct: 79  ISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSAQKKLFFN 138

Query: 180 LRTARELSQRLD----HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIG------G 229
           LR A+     L+    H  + ++IA +L       T+++ +N R+S  D  +       G
Sbjct: 139 LRKAKARIGALEEGDLHPDSVKKIATDLG---VTETEVISMNRRMSGGDASLNATVGSEG 195

Query: 230 DGDKALLDILPD---SHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEP 286
           +G     D L D       D E   + +  RE L + L+ LN ++K++L +R   L  + 
Sbjct: 196 EGTMQWQDWLEDEDADQAGDYEARDELEARRELLASALEVLNDREKDILTQR--RLADQA 253

Query: 287 STLEEVGREINLTRERVRQIQVEGL----RRLREILVKQGL 323
            TLE++  +  ++RER+RQI+V       +++RE+  ++G+
Sbjct: 254 KTLEDLSTQYGVSRERIRQIEVRAFEKLQKKMRELASEKGM 294