Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  220 bits (560), Expect = 9e-62
 Identities = 107/269 (39%), Positives = 180/269 (66%), Gaps = 3/269 (1%)

Query: 50  DASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIESNLRLVVKI 106
           + S   ++  +  ++++G    L   E     ++  +G++ AR   K M+E+NLRLV+ I
Sbjct: 380 ERSTDKIEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISI 439

Query: 107 SRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI 166
           +++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTI
Sbjct: 440 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 499

Query: 167 RLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTP 226
           R+P+H+++ +N  +RT R++   +  EPTPEE+A +L  P++ V K++++ +   S++TP
Sbjct: 500 RIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETP 559

Query: 227 IGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEP 286
           IG + D  L D + D +   P  S   ++++E+    L  L P+++ VL  RFG+     
Sbjct: 560 IGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTD 619

Query: 287 STLEEVGREINLTRERVRQIQVEGLRRLR 315
            TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 620 HTLEEVGQQFSVTRERIRQIEAKALRKLK 648



 Score = 35.0 bits (79), Expect = 5e-06
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 16  EDEALEVLE----TDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPL 71
           EDE  E  E    T+   T     VAV GA+ +  +  D      D  +MYL E+G   L
Sbjct: 75  EDEEAEEEEQKGSTELVTTESNREVAVAGAAAEKLDRTD------DPVRMYLREMGSVEL 128

Query: 72  LTAEEEVLYARRALRGDEAARKRMI 96
           L+ E E+  A+R     EA R  MI
Sbjct: 129 LSREGEIAIAKRI----EAGRNTMI 149