Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  117 bits (292), Expect = 5e-31
 Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 27/268 (10%)

Query: 71  LLTAEEEV--LYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGL 128
           LL AE E+   YA R  R D  A  R+I + +RL + ++ ++   G  + DLI+E  LGL
Sbjct: 20  LLDAETELQLAYAWRDER-DVQALHRLINAYMRLAISMASKFRRYGAPMNDLIQEAGLGL 78

Query: 129 IRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR---------LPIHVVKELNIY 179
           ++A +KFDP+RG RFSTYA WWI+ +I+  +M     +R         L  ++ +     
Sbjct: 79  MKAADKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQAQL 138

Query: 180 LRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGG-----DGDKA 234
            R A+    RLD     ++IA E+  P+ DV  M   + R++  D  +       D  + 
Sbjct: 139 ERQAQSDGARLDKHQLHQQIATEIGVPLRDVQMM---DGRLAGSDFSLNAVQSSEDEGRE 195

Query: 235 LLDILPDSHNADPEFSTQDDDIRESLLNWLDE----LNPKQKEVLARRFGLLGYEPSTLE 290
            ++ L D      E   +  D R+ L +WL E    LN +++ ++  R   L  +P TLE
Sbjct: 196 WIEALEDDSAQAAELVEESHDTRQ-LRDWLVEAMQALNERERFIITER--KLREKPRTLE 252

Query: 291 EVGREINLTRERVRQIQVEGLRRLREIL 318
            +G E++L++ERVRQ++    +++R+ L
Sbjct: 253 SLGNELDLSKERVRQLEAGAFQKMRKSL 280