Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., RNA polymerase sigma factor RpoD from Pedobacter sp. GW460-11-11-14-LB5

 Score =  210 bits (534), Expect = 4e-59
 Identities = 112/263 (42%), Positives = 172/263 (65%), Gaps = 4/263 (1%)

Query: 53  AKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSN 112
           ++SLD    YL EIG   L+TAEEEV+ AR+   GD+AA +R+ ++NLR VV ++++Y N
Sbjct: 15  SQSLDK---YLHEIGKVDLITAEEEVILARKIREGDQAALERLTKTNLRFVVSVAKQYQN 71

Query: 113 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV 172
           +GL L DLI EGNLGLI+A ++FD  +GF+F +YA WWIRQ+I +A+  Q+R +RLP++ 
Sbjct: 72  QGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAEQSRIVRLPLNQ 131

Query: 173 VKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGD 232
           V  L+   +   +L Q  + EP+PEE+A  L+  VD ++  L  + R  S+D P     +
Sbjct: 132 VGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKISDTLSNSGRHVSMDAPFVQGEE 191

Query: 233 KALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEV 292
             LLD+L ++H  + + S  ++ + E +   L  L  +++E++   FGL    P +LEE+
Sbjct: 192 NTLLDVL-ENHEPNTDSSLINESLSEEIKRSLSTLTEREREIIVLFFGLGSNHPLSLEEI 250

Query: 293 GREINLTRERVRQIQVEGLRRLR 315
           G + NLTRERVRQI+ + L+RLR
Sbjct: 251 GEKFNLTRERVRQIKDKALQRLR 273