Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  442 bits (1138), Expect = e-129
 Identities = 221/308 (71%), Positives = 265/308 (86%), Gaps = 3/308 (0%)

Query: 24  ETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           E+D  +T+ +E++      + V+++     K+LDATQ+YLSEIGFSPLL+AEEEV ++R+
Sbjct: 20  ESDLSVTNSKEVLKDAELEQQVQDDLQ---KNLDATQLYLSEIGFSPLLSAEEEVYFSRK 76

Query: 84  ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 143
           AL+G E +R RMIESNLRLVVKI+RRY+NRGLALLDLIEEGNLGLIRAVEKFDPERGFRF
Sbjct: 77  ALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 136

Query: 144 STYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALEL 203
           STYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLRTAREL+ +LDHEPT EEIA +L
Sbjct: 137 STYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHKLDHEPTAEEIAEQL 196

Query: 204 DRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNW 263
           D P  DV+KML+LNERI+SVDTP+GGD DKALLD+L D     P++  QDDD+ +S++ W
Sbjct: 197 DLPSSDVSKMLKLNERITSVDTPLGGDNDKALLDVLADDDCVGPDYKVQDDDMSKSVVRW 256

Query: 264 LDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGL 323
           LDELN KQ+EVLARRFGLLGYEPSTLE VG+EI LTRERVRQIQVE L+RLR++L  QGL
Sbjct: 257 LDELNSKQREVLARRFGLLGYEPSTLENVGKEIGLTRERVRQIQVEALKRLRDLLSAQGL 316

Query: 324 NMEALFNV 331
           ++EA+F V
Sbjct: 317 SVEAIFRV 324