Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  208 bits (530), Expect = 3e-58
 Identities = 116/290 (40%), Positives = 185/290 (63%), Gaps = 13/290 (4%)

Query: 32  DEELVAVEGASED---VREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGD 88
           +EE+ A +  +E    V E+       LDA +   +E G +  + A +++   RR   G+
Sbjct: 320 NEEIAAKKPYAEGLEMVAEDVQRCRAKLDAIE---NETGLA--IAAIKDI--NRRMSIGE 372

Query: 89  EAAR---KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 145
             AR   K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FST
Sbjct: 373 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 432

Query: 146 YATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDR 205
           YATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EP+PEE+A  +  
Sbjct: 433 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLM 492

Query: 206 PVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLD 265
           P D + K+L++ +   S++TPIG D D  L D + D+    P  S   + ++ +    L 
Sbjct: 493 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLKNATHEVLA 552

Query: 266 ELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
            L  ++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 553 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602



 Score = 38.5 bits (88), Expect = 5e-07
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 31  SDEELVAVEGASEDVREEFDAS--------AKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
           +DE +++ +   ED  EE  A+         ++ D  +MY+ E+G   LLT E E++ A+
Sbjct: 65  ADEIMMSEDSTDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 83  RALRGDEAARKRMIE--SNLRLVVKISRRYSNRGLALLDLI 121
           R   G    +  + E    + ++++   RY    + L D+I
Sbjct: 125 RIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDII 165