Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RNA polymerase sigma factor RpoS from Dechlorosoma suillum PS

 Score =  294 bits (752), Expect = 2e-84
 Identities = 161/321 (50%), Positives = 218/321 (67%), Gaps = 8/321 (2%)

Query: 14  DFED-EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLL 72
           DF D +A E    D     DE L A   A+E       A     D TQ+YL+EIG  PLL
Sbjct: 9   DFPDGDAEEAFAADE--AQDESLAAAATAAEGDDGAPPAYELLNDVTQLYLNEIGAKPLL 66

Query: 73  TAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAV 132
           T  EE+ ++RRA  G+ AAR++MIE NLRLVV I++ Y NRG+ LLDL+EEGNLGLI A+
Sbjct: 67  TPAEELEWSRRAKAGEFAARQKMIEHNLRLVVNIAKHYLNRGIPLLDLVEEGNLGLIHAL 126

Query: 133 EKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRL-- 190
           EKFDPERGFRFSTYATWWIRQ+IERA+MNQ+RTIRLP+HVVKE+N+ LR  R L      
Sbjct: 127 EKFDPERGFRFSTYATWWIRQSIERAIMNQSRTIRLPVHVVKEINVVLRAMRHLDGARGL 186

Query: 191 --DHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLD-ILPDSHNADP 247
               E   EE+A  L +PVDD+  +L LNE ++S+DTP+  D +  + D +  DS  ADP
Sbjct: 187 TPSRETRVEEVAHLLGKPVDDIRHILHLNEHVASLDTPLDIDPNHTVGDSVADDSAGADP 246

Query: 248 EFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQ 307
               Q++++ + +L W+++L  KQ++V+ RR+GL G E +TLE +  ++ LTRERVRQIQ
Sbjct: 247 VGVLQENELNDLVLQWVEQLPEKQRQVVERRYGLKGAEIATLEAIAADLGLTRERVRQIQ 306

Query: 308 VEGLRRLREILVKQGLNMEAL 328
            E L +LR I+ + G++ +++
Sbjct: 307 GEALSQLRRIIKRGGVDRDSI 327