Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score =  211 bits (537), Expect = 4e-59
 Identities = 99/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A++ M E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 415 AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 474

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q    EP P  +A++++ P + +
Sbjct: 475 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKI 534

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++++   S++TPIG D D  L D + D+    P  +     +RE     LD L P+
Sbjct: 535 RKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPR 594

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 595 EAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 639



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 10  VEEFDFEDEALEVLETD-AELTSDEELVA--VEGASEDVREEFDASAKSLDATQMYLSEI 66
           ++ FD    A ++L +D A   +D+E V    E A   V  EF    ++ D  +MY+ E+
Sbjct: 92  IQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEAALSTVDSEF---GRTTDPVRMYMREM 148

Query: 67  GFSPLLTAEEEVLYARRALRGDEAARKRMIES 98
           G   LLT E E+  A+R     E   K MI++
Sbjct: 149 GTVELLTREGEIEIAKRI----EDGLKHMIQA 176