Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RNA polymerase sigma factor SigB from Mycobacterium tuberculosis H37Rv

 Score =  214 bits (545), Expect = 2e-60
 Identities = 117/298 (39%), Positives = 179/298 (60%), Gaps = 27/298 (9%)

Query: 45  VREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR--------------------- 83
           V  + DA + + D  ++YL+ IG + LL A  EV  A+R                     
Sbjct: 13  VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72

Query: 84  ------ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDP 137
                  +R  EAAR+ ++E+NLRLVV +++RY+ RG+ LLDLI+EGNLGLIRA+EKFD 
Sbjct: 73  KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132

Query: 138 ERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPE 197
            +GF+FSTYATWWIRQ I R + +Q+RTIRLP+H+V+++N   R  RE+ Q L  E T E
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192

Query: 198 EIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIR 257
           E+A E   P+D +  +L  +    S+D P+G + +  L D + D+     E +   + + 
Sbjct: 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252

Query: 258 ESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
             + + L  L+ ++ +V+  RFGL   +P TL+++G+   L+RERVRQI+ + + +LR
Sbjct: 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 310