Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., RNA polymerase sigma factor SigA (sigma-A) from Mycobacterium tuberculosis H37Rv

 Score =  216 bits (549), Expect = 1e-60
 Identities = 131/335 (39%), Positives = 191/335 (57%), Gaps = 39/335 (11%)

Query: 17  DEALEVLETDAELTSDEELVAVEGASEDVRE-----EFDASAKSLDATQMYLSEIGFSPL 71
           D+  E+ E   +  +  + V  E  SE +R+     E  ASA   D+ + YL +IG   L
Sbjct: 184 DDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASA---DSVRAYLKQIGKVAL 240

Query: 72  LTAEEEVLYARRA-------------------------------LRGDEAARKRMIESNL 100
           L AEEEV  A+R                                 R  + A+  ++E+NL
Sbjct: 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300

Query: 101 RLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM 160
           RLVV +++RY+ RG+A LDLI+EGNLGLIRAVEKFD  +G++FSTYATWWIRQ I RA+ 
Sbjct: 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360

Query: 161 NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERI 220
           +Q RTIR+P+H+V+ +N   R  REL Q L  EPTPEE+A E+D   + V ++ +     
Sbjct: 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420

Query: 221 SSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFG 280
            S+D  IG +GD  L D + DS       +     +++ L + LD L+ ++  V+  RFG
Sbjct: 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480

Query: 281 LLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           L   +P TL+E+G+   +TRER+RQI+ + + +LR
Sbjct: 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 515