Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  231 bits (588), Expect = 5e-65
 Identities = 118/255 (46%), Positives = 177/255 (69%), Gaps = 5/255 (1%)

Query: 72  LTAEEEVLYARRALRGDE---AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGL 128
           +T  EEVL+  R  RG+     A++ +I SNLRLVV I+++Y+NRGL  LDLI+EGN+GL
Sbjct: 332 VTDLEEVLW--RIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGL 389

Query: 129 IRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQ 188
           ++AV+KF+ +RG++FSTYATWWIRQ I RA+ +Q RTIR+P+H+++ +N  +RT+R L Q
Sbjct: 390 MKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQ 449

Query: 189 RLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPE 248
            L  +PTPEEIA  +D P+D V K+L++ +   S++TPIG + D +L D + D     P 
Sbjct: 450 ELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPA 509

Query: 249 FSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQV 308
               +  + E + + L +L P++++VL +RFG+      TLEEVG+  N+TRER+RQI+ 
Sbjct: 510 EEVVNTKLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEA 569

Query: 309 EGLRRLREILVKQGL 323
           + LR+LR  +  Q L
Sbjct: 570 KALRKLRHPVRSQML 584



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 25/148 (16%)

Query: 5   NTVTKVEEFDFEDEALEVLETDAELTSDEELVAVE-GASEDV------------REEFDA 51
           NT  ++EE     + LE+   D E   D + ++V  G SE+              E  D 
Sbjct: 37  NTPEQIEEIIGIFDQLEIAIVDTE--KDGKKISVSPGESEEEPSGEPGLDLVEDEESADY 94

Query: 52  SAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL--VVKISRR 109
           S++S D  +MYL E+G  PLL  + EV  A++   G++     ++E  + +  ++ +   
Sbjct: 95  SSRSTDPVRMYLREMGAVPLLDRDGEVQIAKKIELGEQDVLYALVEVPVAVEELINVGED 154

Query: 110 YSNRGLALLDLIEEGNLGLIRAVEKFDP 137
                + L D        +++ +E+ DP
Sbjct: 155 LKQNRIKLKD--------VVKTIEEDDP 174