Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., putative RNA polymerase, sigma 70 family subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  143 bits (360), Expect = 1e-38
 Identities = 100/280 (35%), Positives = 160/280 (57%), Gaps = 16/280 (5%)

Query: 53  AKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYS 111
           A + D+  +YL EI   PLL  +EE   ARR   +GD  A  R++ S+LRLVVKI+  + 
Sbjct: 189 ASTRDSLHLYLREISRFPLLKPDEEFDLARRVQEQGDSDAAFRLVTSHLRLVVKIAMDFQ 248

Query: 112 NRGLA-LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-P 169
            R +  +LDLI+EGN+GL+RAV KFDPE+G +FS YA +WI+  I + +M+  R +++  
Sbjct: 249 RRWMQNVLDLIQEGNVGLMRAVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGT 308

Query: 170 IHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIG 228
               ++L   L   R+      ++P    ++ +L+  V+ V +M  RL+    S+D  +G
Sbjct: 309 TQAQRKLFYNLNKERQRLIAQGYDPDATILSEKLNVTVEQVIEMEQRLDSSDMSLDITVG 368

Query: 229 GD-GDKALLDILP------DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGL 281
            D G    +D LP      +   A+ E +    D  +++   L +L+ K+  +L  R  L
Sbjct: 369 EDSGGATRMDFLPALGPGIEETLANSEIARMVQDRVQTI---LPKLSDKEAYILQHR--L 423

Query: 282 LGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ 321
           L  +P TL E+G + ++TRERVRQI+   L++LR+ L K+
Sbjct: 424 LSEQPVTLREIGEKYDITRERVRQIEARLLQKLRDHLFKE 463