Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  179 bits (454), Expect = 9e-50
 Identities = 92/234 (39%), Positives = 142/234 (60%)

Query: 82  RRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGF 141
           RRA     A R+++I+SNLRL V I+RRY   G+ + DLI++ N+GLI+AVE+FDP +GF
Sbjct: 87  RRAFHLATACRRKLIQSNLRLAVHIARRYGQHGIPMSDLIQDANVGLIKAVERFDPTKGF 146

Query: 142 RFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIAL 201
           RFSTYA WWI + ++R L   TR +  P +VV E+    + +  + Q L   P+  E+A 
Sbjct: 147 RFSTYAYWWISEEVKRCLQRGTRLVHTPENVVDEIRQLHKVSLRMHQSLGRTPSQSELAR 206

Query: 202 ELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLL 261
           E++     + ++  L  R  S D P+  DG   L D L       P+    D D + +L 
Sbjct: 207 EMEASPSRIGELRALATREISTDVPLVEDGSVTLGDSLDAGDQMAPDHPMSDRDRQRTLK 266

Query: 262 NWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + L ELN ++K++L+RR+GL   EP TL+ +  ++ ++RERVRQI+   L++L+
Sbjct: 267 SMLSELNDREKDILSRRYGLGLPEPETLQVISDDLGISRERVRQIEKTALKKLQ 320