Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase, sigma 70 subunit, RpoD from Marinobacter adhaerens HP15

 Score =  216 bits (550), Expect = 1e-60
 Identities = 102/225 (45%), Positives = 158/225 (70%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 372 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 431

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+   ++ P D +
Sbjct: 432 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 491

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + D     P  S   + +RE+  + L  L  +
Sbjct: 492 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREATRSVLAGLTAR 551

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 552 ESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 596



 Score = 37.7 bits (86), Expect = 8e-07
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 18  EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEE 77
           +A  +L T+ + T+DE   A E A+     E DA  ++ D  +MY+ E+G   LLT E E
Sbjct: 62  DADTLLMTEGDSTADEA-AAAEAAAALAAVETDAG-RTTDPVRMYMREMGTVELLTREGE 119

Query: 78  VLYARRALRG 87
           ++ A+R   G
Sbjct: 120 IVIAKRIEEG 129