Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  404 bits (1039), Expect = e-117
 Identities = 215/318 (67%), Positives = 255/318 (80%), Gaps = 7/318 (2%)

Query: 14  DFEDEALEVLETDAELTSDEELVAVEGASEDVREE--FDASAKSLDATQMYLSEIGFSPL 71
           D ED+ L   + + E T  EE+  VE   ED+  +  +  S K LDATQ+YL+EIGFSPL
Sbjct: 18  DAEDQLLAEEKVEKEPT--EEVAEVE---EDIPTQGRYFTSQKQLDATQLYLNEIGFSPL 72

Query: 72  LTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRA 131
           LT EEEV +AR A +G+E+ RKRMIESNLRLVVKI+RRY NRGL LLDLIEEGNLGLIRA
Sbjct: 73  LTPEEEVYFARLARKGEESGRKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRA 132

Query: 132 VEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLD 191
           VEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLR AREL+Q+LD
Sbjct: 133 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNLYLRAARELTQKLD 192

Query: 192 HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFST 251
           HEP+ EEIA  +D+PV DV +ML LNER++S+DTPIG  G+K+LLD + D   +DP    
Sbjct: 193 HEPSAEEIARMVDKPVADVKRMLGLNERVASMDTPIGAGGEKSLLDTVADEGASDPADLL 252

Query: 252 QDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGL 311
           QD+++   L  W+D+L+ KQ+EVL+RRFGL GY  STLEEVG+EI LTRERVRQIQVE L
Sbjct: 253 QDNNMCSCLEKWIDQLSDKQQEVLSRRFGLRGYPVSTLEEVGQEIGLTRERVRQIQVEAL 312

Query: 312 RRLREILVKQGLNMEALF 329
           RRLREIL K+GL+   LF
Sbjct: 313 RRLREILEKEGLSGNLLF 330