Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Pantoea sp. MT58

 Score =  215 bits (547), Expect = 3e-60
 Identities = 117/277 (42%), Positives = 176/277 (63%), Gaps = 7/277 (2%)

Query: 42  SEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIES 98
           SE + E  D   +SL        E G    LT E+     RR   G+  AR   K M+E+
Sbjct: 327 SEKLLEVQDDVMRSLQKLAQVEEETG----LTIEQVKDINRRMSIGEAKARRAKKEMVEA 382

Query: 99  NLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 158
           NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+
Sbjct: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442

Query: 159 LMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNE 218
           + +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+A  +  P D + K+L++ +
Sbjct: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502

Query: 219 RISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARR 278
              S++TPIG D D  L D + D+    P  S   + +R +  + L  L  ++ +VL  R
Sbjct: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMR 562

Query: 279 FGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           FG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 563 FGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 599



 Score = 31.6 bits (70), Expect = 5e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 28  ELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           E +SD +  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 69  ENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 124