Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score =  213 bits (542), Expect = 1e-59
 Identities = 112/258 (43%), Positives = 170/258 (65%), Gaps = 3/258 (1%)

Query: 61  MYLSEIGFSPLLTAEEEVLYARRALRGDEAAR---KRMIESNLRLVVKISRRYSNRGLAL 117
           M L +I     LT E+     RR   G+  AR   K M+E+NLRLV+ I+++Y+NRGL  
Sbjct: 343 MKLQQIEQETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 402

Query: 118 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELN 177
           LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N
Sbjct: 403 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 462

Query: 178 IYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLD 237
              R +R++ Q +  EPTPEE+A  +  P D + K+L++ +   S++TPIG D D  L D
Sbjct: 463 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 522

Query: 238 ILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREIN 297
            + D+    P  S   + +R +  + L  L  ++ +VL  RFG+      TLEEVG++ +
Sbjct: 523 FIEDNTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD 582

Query: 298 LTRERVRQIQVEGLRRLR 315
           +TRER+RQI+ + LR+LR
Sbjct: 583 VTRERIRQIEAKALRKLR 600



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 18  EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEE 77
           +A ++L  +    +DE+  A E A++ +        ++ D  +MY+ E+G   LLT E E
Sbjct: 61  DADDLLLAETNNNTDED--AEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 118

Query: 78  VLYARR 83
           +  A+R
Sbjct: 119 IDIAKR 124