Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Klebsiella michiganensis M5al

 Score =  456 bits (1173), Expect = e-133
 Identities = 237/331 (71%), Positives = 276/331 (83%), Gaps = 7/331 (2%)

Query: 3   VSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEF----DASAKSLDA 58
           +S    KV + +   E  E  E   E+  ++ LV  E +  D+ EE      A+ + LDA
Sbjct: 1   MSQNTLKVHDLN---EDAEFDENGVEVFDEKALVEEEPSDSDLAEEELLSQGATQRVLDA 57

Query: 59  TQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118
           TQ+YL EIG+SPLLTAEEEV +ARRALRGD A+R+RMIESNLRLVVKI+RRY NRGLALL
Sbjct: 58  TQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117

Query: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNI 178
           DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIH+VKELN+
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177

Query: 179 YLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDI 238
           YLRTARELS +LDHEP+ EEIA +LD+PVDDV++MLRLNERI+SVDTP+GGD +KALLDI
Sbjct: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237

Query: 239 LPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINL 298
           L D  +  PE +TQDDD+++S++ W  ELN KQ+EVLARRFGLLGYE +TLE+VGREI L
Sbjct: 238 LADEKDNGPEDTTQDDDMKQSIVKWQFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297

Query: 299 TRERVRQIQVEGLRRLREILVKQGLNMEALF 329
           TRERVRQIQVEGLRRLREIL  QGLN+EALF
Sbjct: 298 TRERVRQIQVEGLRRLREILQSQGLNIEALF 328