Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Enterobacter sp. TBS_079

 Score =  212 bits (539), Expect = 2e-59
 Identities = 109/247 (44%), Positives = 166/247 (67%), Gaps = 3/247 (1%)

Query: 72  LTAEEEVLYARRALRGDEAAR---KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGL 128
           LT E+     RR   G+  AR   K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL
Sbjct: 355 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 414

Query: 129 IRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQ 188
           ++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q
Sbjct: 415 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 474

Query: 189 RLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPE 248
            +  EPTPEE+A  +  P D + K+L++ +   S++TPIG D D  L D + D+    P 
Sbjct: 475 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 534

Query: 249 FSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQV 308
            S   + +R +  + L  L  ++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ 
Sbjct: 535 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 594

Query: 309 EGLRRLR 315
           + LR+LR
Sbjct: 595 KALRKLR 601



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 27  AELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           AE +++ +  A E A++ +        ++ D  +MY+ E+G   LLT E E+  A+R
Sbjct: 68  AETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 124