Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., RNA polymerase sigma factor RpoD from Dyella japonica UNC79MFTsu3.2

 Score =  223 bits (567), Expect = 1e-62
 Identities = 115/269 (42%), Positives = 180/269 (66%), Gaps = 11/269 (4%)

Query: 54  KSLDATQMYLSEIG---FSPLLTAEEEVLYARRALRGDEA----ARKRMIESNLRLVVKI 106
           +++D  Q  L+ I    F PL   +E      R +   EA    A+K M+E+NLRLV+ I
Sbjct: 340 EAIDGEQEKLASIEHKLFLPLTDIKE----INRTMSVGEAKARRAKKEMVEANLRLVISI 395

Query: 107 SRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI 166
           +++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R++ +Q RTI
Sbjct: 396 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 455

Query: 167 RLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTP 226
           R+P+H+++ +N   R +R++ Q+   EPTPEE+A E++ P D + K+L++ +   S++TP
Sbjct: 456 RIPVHMIETINKLNRISRQMLQQFGREPTPEELAKEMEMPEDKIRKVLKIAKEPISMETP 515

Query: 227 IGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEP 286
           IG D D  L D + D++ + P  S  +  + E++   L  L P++ +VL  RFG+     
Sbjct: 516 IGDDEDSHLGDFIEDTNASSPIESATETGLMETVREVLAGLTPREAKVLRMRFGIDMNTD 575

Query: 287 STLEEVGREINLTRERVRQIQVEGLRRLR 315
            TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 576 HTLEEVGKQFDVTRERIRQIEAKALRKLR 604



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 25  TDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRA 84
           TD E  ++E +  +     +V        ++ D  +MY+ E+G   LLT E E+  A+R 
Sbjct: 77  TDDEAAAEEAVALLSAVDSEV-------GRTTDPVRMYMREMGTVELLTREGEIAIAKRI 129

Query: 85  LRG 87
             G
Sbjct: 130 EEG 132