Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  231 bits (588), Expect = 5e-65
 Identities = 117/251 (46%), Positives = 175/251 (69%), Gaps = 5/251 (1%)

Query: 76  EEVLYARRALRGDEAA---RKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAV 132
           EEVL+  R  RG+  A   ++ +I SNLRLVV I+++Y+NRGL  LDLI+EGN+GL++AV
Sbjct: 336 EEVLW--RIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAV 393

Query: 133 EKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDH 192
           +KF+ +RG++FSTYATWWIRQ I RA+ +Q RTIR+P+H+++ +N  +RT+R L Q L  
Sbjct: 394 DKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGR 453

Query: 193 EPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQ 252
           +PTPEEIA  +D P+D V K+L++ +   S++TPIG + D +L D + D     P     
Sbjct: 454 DPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVV 513

Query: 253 DDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLR 312
           +  + E + + L +L P++++VL +RFG+      TLEEVG+  N+TRER+RQI+ + LR
Sbjct: 514 NTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALR 573

Query: 313 RLREILVKQGL 323
           +LR  +  Q L
Sbjct: 574 KLRHPVRSQTL 584



 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 46/228 (20%)

Query: 5   NTVTKVEE----FDFEDEALEVLETDAELTS-----DEELVAVEGASE--DVREEFDASA 53
           NT  ++EE    FD  D A+   E D +  S      EE    EG  +  D  E  D S+
Sbjct: 37  NTPEQIEEIIGIFDQLDIAIVDSEKDGKKISMSPGESEEEAPSEGGLDLSDDEETVDYSS 96

Query: 54  KSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL--VVKISRRYS 111
           +S D  +MYL E+G  PLL  + EV+ A++   G++     ++E  + +  +V +     
Sbjct: 97  RSTDPVRMYLREMGSVPLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLK 156

Query: 112 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH 171
              + L D        +++ +E+ DP                      MNQ + +   I 
Sbjct: 157 QNRIKLKD--------VVKTIEEDDPSED------------------EMNQRQRV---IL 187

Query: 172 VVKELNIYLRTARELSQRLDHEPTPEEIALELDRPV----DDVTKMLR 215
           +++E+    +  R++  +LD   T E     + R +    +D+   LR
Sbjct: 188 LLEEIRTTFKKKRKVYSKLDECCTLERRVASVQREIMNYKEDIVSRLR 235