Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., sigma 70 family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  150 bits (378), Expect = 6e-41
 Identities = 108/327 (33%), Positives = 178/327 (54%), Gaps = 14/327 (4%)

Query: 7   VTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSL-----DATQM 61
           V  VE  D  D++ +  E   +   +++++ + G  +   + F  +A +      D+  +
Sbjct: 21  VDDVEIIDGPDDSADDTEDTEDFVDEDDVIDI-GDDDHAPDTFHLNAPATVSTGKDSLHL 79

Query: 62  YLSEIGFSPLLTAEEEVLYARRALR-GDEAARKRMIESNLRLVVKISRRYSNRGLA-LLD 119
           YL EI   P+L  EEE   A+R    GD  A  R++ S+LRLVVKI+  +  R +  +LD
Sbjct: 80  YLREISRFPMLKPEEEYELAKRVRETGDGDAAFRLVSSHLRLVVKIAMDFQRRWMQNVLD 139

Query: 120 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELNI 178
           LI+EGN+GL+RAV KFDPE+G +FS YA +WI+  I + +M+  R +++      ++L  
Sbjct: 140 LIQEGNVGLMRAVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQRKLFY 199

Query: 179 YLRTARELSQRLDHEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA-LL 236
            L   R+      ++P    ++  L+   + V +M  RL+    S+D P+G +G  A  +
Sbjct: 200 NLNKERQKLILQGYDPDAATLSERLNVTKEQVVEMEQRLDASDVSLDIPVGDEGGGASRM 259

Query: 237 DILPDSHNADPEFSTQDDDIRESLLNWLDELNPK--QKEVLARRFGLLGYEPSTLEEVGR 294
           D LP +     E +  + +I   + N L  + PK   KEV   +  LL  EP TL E+G 
Sbjct: 260 DFLP-ALGPGIEDALSNHEIASMVQNRLQSIIPKLSDKEVDILQNRLLSEEPVTLREIGE 318

Query: 295 EINLTRERVRQIQVEGLRRLREILVKQ 321
           + ++TRERVRQI+   L+++R+ L K+
Sbjct: 319 KYDITRERVRQIEARLLQKIRDHLFKE 345