Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase, sigma 32 subunit, RpoH (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  134 bits (337), Expect = 3e-36
 Identities = 93/269 (34%), Positives = 150/269 (55%), Gaps = 14/269 (5%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL EI   P+L  EEE + A+R +   D  A  +M+ S+LRL  KI+  Y   GL   ++
Sbjct: 19  YLQEIRKFPMLEPEEEYMLAKRWVDHEDTEAAHKMVTSHLRLAAKIAMGYRGYGLPQAEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELNIY 179
           I E N+GL++AV++FDPE+GFR +TYA WWIR +I+  ++     ++L      K+L   
Sbjct: 79  ISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSAQKKLFFN 138

Query: 180 LRTARELSQRLDH-EPTPE---EIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR A+     L+  +  PE    IA +L+   D+V  M  R++   +S++  IG DG+ A
Sbjct: 139 LRKAKNRIGALEEGDLRPENVARIANDLNVTEDEVISMNRRMSGGDASLNAMIGSDGEGA 198

Query: 235 L--LDILPDSHNADPEFSTQDDDI---RESLLNWLDELNPKQKEVLARRFGLLGYEPSTL 289
               D L D      +   + D++   RE L   +  LN ++K++L +R   L  +P+TL
Sbjct: 199 TEWQDWLEDEDADQADDFAEKDELMVRRELLAEAMGVLNDREKDILMKR--RLEDKPATL 256

Query: 290 EEVGREINLTRERVRQIQVEGLRRLREIL 318
           EE+     ++RER+RQI+V    +L++ +
Sbjct: 257 EELSEVYGVSRERIRQIEVRAFEKLQKAM 285