Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  219 bits (557), Expect = 2e-61
 Identities = 101/225 (44%), Positives = 162/225 (72%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 426 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 485

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N  +RT R++   +  EPTPEE+A +L  P++ V
Sbjct: 486 IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV 545

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG + D  L D + D +   P  S   ++++E+    L  L P+
Sbjct: 546 RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPR 605

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           ++ VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 606 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 650



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 10  VEEFDFED-EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGF 68
           +EE + ED +A     T    +S    VAV  +S +  +  D      D  +MYL E+G 
Sbjct: 74  IEEDEAEDGDAPANASTQVVESSSSREVAVSTSSSETLDRTD------DPVRMYLREMGS 127

Query: 69  SPLLTAEEEVLYARRALRGDEAARKRMI 96
             LL+ E E+  A+R     EA R  MI
Sbjct: 128 VELLSREGEIAIAKRI----EAGRNTMI 151