Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase sigma factor RpoH from Caulobacter crescentus NA1000

 Score =  136 bits (343), Expect = 6e-37
 Identities = 91/268 (33%), Positives = 148/268 (55%), Gaps = 13/268 (4%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL+EI   P+L+ +EE + A+R     D  A  +M+ S+LRLV KI+  Y   GL + ++
Sbjct: 21  YLTEIRKFPMLSKDEEFMLAQRWKEHQDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEV 80

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+GL++AV+KF+PE+GFR +TYA WWIR +I+  ++     +++      K+L   
Sbjct: 81  ISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFN 140

Query: 180 LRTARELSQRLD----HEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR A+           H     +IA +L     +V  M  RL+   +S++ P+  DG+  
Sbjct: 141 LRKAKSQIAAFQEGDLHPDQVSQIATKLGVLDSEVISMNRRLSGPDASLNAPLRADGESE 200

Query: 235 LLDILPDSHNADPEFSTQDDD---IRESLL-NWLDELNPKQKEVLARRFGLLGYEPSTLE 290
             D L D      E    +D+   +R SLL   + EL  +++ +L  R   L  +P+TLE
Sbjct: 201 WQDWLADEEQVSQETRVAEDEEKSLRMSLLEEAMVELTDRERHILTER--RLKDDPTTLE 258

Query: 291 EVGREINLTRERVRQIQVEGLRRLREIL 318
           E+  +  ++RERVRQI+V    +L++ +
Sbjct: 259 ELAAQYGVSRERVRQIEVRAFEKLQKTM 286