Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000

 Score =  218 bits (554), Expect = 4e-61
 Identities = 102/225 (45%), Positives = 162/225 (72%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 414 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 473

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V
Sbjct: 474 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 533

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG + D  L D + D +   P  +    ++RE+    L  L P+
Sbjct: 534 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPR 593

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           ++ VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 594 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 638



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 24  ETDAELTSDEELVAVEGASEDVREEFDASA-KSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
           E DAE     E+   +  +  +  +  A+  ++ D  +MYL E+G   LL+ E E+  A+
Sbjct: 79  EEDAENAEGGEVATRDENTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAK 138

Query: 83  RALRGDEAARKRMIESNLRL-VVKISRRYSNRGLALL-DLIE-EGNLGLIRAV 132
           R   G +   + + ES L    + + R     G  LL ++I+ EG    I  V
Sbjct: 139 RIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGV 191