Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., RNA polymerase sigma factor RpoD from Ralstonia sp. UNC404CL21Col

 Score =  210 bits (535), Expect = 8e-59
 Identities = 98/225 (43%), Positives = 158/225 (70%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A++ M E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 535 AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 594

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q   +EP P  +A +++ P D +
Sbjct: 595 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKI 654

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG D D  L D + D++   P  +     +R  + + LD L P+
Sbjct: 655 RKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRGVVKDVLDSLTPR 714

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 715 EAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 759



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 18  EALEVLETDAELTSDEELVA-VEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEE 76
           E L + +    +T++EE     E A   V  EF    ++ D  +MY+ E+G   LLT E 
Sbjct: 215 ETLLLNDNAPSVTTEEEAEEEAEAALSTVDSEF---GRTTDPVRMYMREMGTVELLTREG 271

Query: 77  EVLYARRALRGDEAARKRMIESNLRLVVKIS 107
           E+  A+R     EA  K M+ +     V IS
Sbjct: 272 EIEIAKRI----EAGLKDMVMAISACPVTIS 298