Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., RNA polymerase sigma factor RpoS from Ralstonia sp. UNC404CL21Col

 Score =  268 bits (685), Expect = 2e-76
 Identities = 152/317 (47%), Positives = 202/317 (63%), Gaps = 4/317 (1%)

Query: 14  DFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLT 73
           D  D +    E D E    EE  A E A E+   +   +  + D  Q YL+ I   PLLT
Sbjct: 63  DLNDTSDSADEPDEEEEDGEE--AEEPAPEEDFRKVLQAELAADTVQHYLNRISIKPLLT 120

Query: 74  AEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVE 133
             EE+ ++  A  G+ AAR+ MIE NLRLVV I++ Y NRG+ LLDLIEEGNLGL+ A+E
Sbjct: 121 PAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIE 180

Query: 134 KFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQR-LD- 191
           KFDPERGFRFSTYATWWIRQ+IERA+MNQ RT+RLP+HV++ELN  LR  R L +  +D 
Sbjct: 181 KFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGVDG 240

Query: 192 HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFST 251
            + + E+IA  L +  ++V  +L LNE  +S+DTP   D   +LLD L D H A P+   
Sbjct: 241 RDASLEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEV 300

Query: 252 QDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGL 311
              ++   + +WL  L+ K + V+ RRFGL   EP+TLEE+  E+ LTRERVRQIQ E L
Sbjct: 301 AHRELSLLMKSWLARLSDKHRYVVERRFGLNYIEPATLEELAAEMGLTRERVRQIQQEAL 360

Query: 312 RRLREILVKQGLNMEAL 328
            +L+     QG+  +A+
Sbjct: 361 VKLKRHFASQGVRKDAV 377