Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., RNA polymerase primary sigma factor from Paraburkholderia graminis OAS925

 Score =  206 bits (524), Expect = 1e-57
 Identities = 96/224 (42%), Positives = 158/224 (70%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+  MIE+NLRLV+ I+++Y NRG+  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 426 AKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWW 485

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           +RQ + R+L +Q RTIR+P+H+++ +N   R +RE+ Q+   E  P  +A  +D   + V
Sbjct: 486 VRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMDLSEEKV 545

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
             +L++ ++  S++TP+G DGD  L D++ DS  + P  +    D+R ++ + LD L+P+
Sbjct: 546 RGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDALDSLSPR 605

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRL 314
           + +VL  R+G+      TLEEVG++ ++TRER+RQI+ + +R+L
Sbjct: 606 EAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKL 649



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 27  AELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR 83
           A ++ D+     E A   V  EF    ++ D  +MY+ E+G + LLT   E+  A+R
Sbjct: 116 AVVSDDQADEETEVALSTVDSEF---GRTTDPVRMYMREMGATELLTRAGEIAIAKR 169