Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  212 bits (540), Expect = 8e-60
 Identities = 111/255 (43%), Positives = 165/255 (64%), Gaps = 1/255 (0%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLI 121
           YL EIG   L+T EEEV  A+R  +GD  A +++  +NLR VV ++++Y N+GL+L DLI
Sbjct: 21  YLQEIGREDLITVEEEVELAQRIRKGDRVALEKLTRANLRFVVSVAKQYQNQGLSLPDLI 80

Query: 122 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLR 181
            EGNLGLI+A EKFD  RGF+F +YA WWIRQ+I +AL  Q+R +RLP++ V  LN   +
Sbjct: 81  NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKISK 140

Query: 182 TARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPD 241
              +  Q  +  P+PEE+A EL+ PVD ++  L+++ R  SVD P     D +LLD+L +
Sbjct: 141 AFSKFEQENERRPSPEELADELEIPVDKISDTLKVSGRHISVDAPFVEGEDNSLLDVLVN 200

Query: 242 SHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRE 301
             +   + S  ++ +   +   L  L  ++KE++   FG +G +  TLEE+G +  LTRE
Sbjct: 201 DDSPMADRSLVNESLAREIDRALSTLTDREKEIIQMFFG-IGQQEMTLEEIGDKFGLTRE 259

Query: 302 RVRQIQVEGLRRLRE 316
           RVRQI+ + +RRLR+
Sbjct: 260 RVRQIKEKAIRRLRQ 274