Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

 Score =  210 bits (535), Expect = 7e-59
 Identities = 98/225 (43%), Positives = 158/225 (70%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A++ M E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 442 AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 501

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q    EP P  +A +++ P D +
Sbjct: 502 IRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKI 561

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K++++ +   S++TPIG D D  L D + D++   P  +     +R+ + + LD L P+
Sbjct: 562 RKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAPADAALHASMRDVVKDVLDSLTPR 621

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 622 EAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 666



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 24/133 (18%)

Query: 15  FEDEALEVLET--DAELTSDEELVAVEGASEDVREEFDASAKSLDA--------TQMYLS 64
           F D  + V E   DAE     +      + ++V EE + +  ++D+         +MY+ 
Sbjct: 106 FNDMGVAVYEQAPDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMR 165

Query: 65  EIGFSPLLTAEEEVLYARRALRGDEAARKRMI------ESNLRLVVKISRRYSNRGLALL 118
           E+G   LLT E E+  A+R     E   K M+       + +  ++ ++ R +N  + + 
Sbjct: 166 EMGTVELLTREGEIEIAKRI----EDGLKHMVMAISACPTTIADILAMAERVANEEIRID 221

Query: 119 DLIEEGNLGLIRA 131
           +L++    GLI A
Sbjct: 222 ELVD----GLIDA 230



 Score = 25.0 bits (53), Expect = 0.006
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 3   VSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDAT 59
           V+N   +++E    D  ++    DA+  S +E  A+E   E+V E+ +   +  D T
Sbjct: 213 VANEEIRIDEL--VDGLIDANAEDADGFSAQEAEAIESEDEEVEEDSEEDEEEDDGT 267