Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RNA polymerase sigma factor RpoS from Burkholderia phytofirmans PsJN

 Score =  266 bits (680), Expect = 6e-76
 Identities = 151/331 (45%), Positives = 203/331 (61%), Gaps = 11/331 (3%)

Query: 8   TKVEEFDFEDEALEVLETDAELTSDEELVAVEGA--SEDVREEFDASAKSLDATQMYLSE 65
           ++VEE   E+  L+  +  A+   +    A E A  ++D R    A   + D  Q YL+ 
Sbjct: 30  SEVEEEIAEERDLDERQGGADEAGETRESASEAAPDADDFRALLQAELTA-DTIQHYLNR 88

Query: 66  IGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGN 125
           I   PLLT EEE  Y+R A  G+  AR+ MIE NLRLVV I++ Y NRG+ LLDLIEEGN
Sbjct: 89  ISVKPLLTVEEEQKYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGN 148

Query: 126 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARE 185
           LGL+ A+EKFDP RGFRFSTYATWWIRQ+IERA+MNQ RT+RLP+HV++ELN  LR  R 
Sbjct: 149 LGLMHAIEKFDPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRH 208

Query: 186 LSQRL--------DHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLD 237
           L +            + + ++IA    +  D+VT +L LNE  +S+D P+  D   +LLD
Sbjct: 209 LEKNSMNSGEAAERRDASIDDIAYLTGKTTDEVTDILALNEHTASLDAPLDLDPASSLLD 268

Query: 238 ILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREIN 297
           +L D  +  P+   Q  ++      WL  L+ K + V+ RRFGL   EP+TLEE+  E+ 
Sbjct: 269 LLSDDQSQSPDAEVQHRELETLTRAWLARLSDKHRHVIERRFGLNHIEPATLEELADEMG 328

Query: 298 LTRERVRQIQVEGLRRLREILVKQGLNMEAL 328
           LTRERVRQIQ E L RL+      G+  +A+
Sbjct: 329 LTRERVRQIQQEALVRLKRFFASNGVRKDAV 359