Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., RNA polymerase, sigma 70 subunit, RpoD (RefSeq) from Shewanella sp. ANA-3

 Score =  209 bits (531), Expect = 2e-58
 Identities = 100/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 381 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 440

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EP+PEE+A  +  P D +
Sbjct: 441 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKI 500

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + D+    P  S   + ++ +    L  L  +
Sbjct: 501 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAR 560

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 561 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 605



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 31  SDEELVAVEGASEDVREEFDAS--------AKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
           +D+ +++ +   ED  EE  A+         ++ D  +MY+ E+G   LLT E E++ A+
Sbjct: 65  ADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 83  RALRGDEAARKRMIE--SNLRLVVKISRRYSNRGLALLDLI 121
           R   G    +  + E    + ++++   +Y    L L D+I
Sbjct: 125 RIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDII 165