Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  430 bits (1106), Expect = e-125
 Identities = 223/329 (67%), Positives = 267/329 (81%), Gaps = 5/329 (1%)

Query: 1   MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQ 60
           MS  N+    E  DF  +  E      ++ +D  LV   G  + V+++     K+LDATQ
Sbjct: 1   MSRINSTAAEELVDFSVDTAEFDLDKEDIAAD--LVQELGLEQQVQDDLQ---KNLDATQ 55

Query: 61  MYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           +YL EIGFSPLL+AEEEV ++R+AL+G E +R RMIESNLRLVVKI+RRY+NRGLALLDL
Sbjct: 56  LYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDL 115

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYL 180
           IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YL
Sbjct: 116 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175

Query: 181 RTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP 240
           RTAREL+Q+LDHEPT EEIA +L     DV++ML+LNE+I+SVD P+GGD DKALLD+L 
Sbjct: 176 RTARELAQKLDHEPTAEEIAEKLQVSSVDVSRMLKLNEKITSVDIPLGGDNDKALLDVLA 235

Query: 241 DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTR 300
           D  N  P++  QD+DI  S++ WL+ELN KQ+EVLARRFGLLGYEPSTLE+VG EI LTR
Sbjct: 236 DDDNVGPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTR 295

Query: 301 ERVRQIQVEGLRRLREILVKQGLNMEALF 329
           ERVRQIQVE L+RLR++L  QGL++EALF
Sbjct: 296 ERVRQIQVEALKRLRDLLGAQGLSVEALF 324