Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., Membrane proteins related to metalloendopeptidases from Pseudomonas stutzeri RCH2

 Score =  189 bits (480), Expect = 7e-53
 Identities = 114/304 (37%), Positives = 161/304 (52%), Gaps = 40/304 (13%)

Query: 8   LGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDV 67
           LG+L+    L GC +   +P  G  +  ++ +R       Y V++GDTL+ IA+    D 
Sbjct: 19  LGVLVITGTLVGCAS---SPQGGGVQVVDRNQRDRVTSGQYIVRRGDTLWSIAFRFGWDW 75

Query: 68  NDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTAT 127
            +L   N + PP+ I+PGQKI+           GG+   A+ A   +   + A A ++  
Sbjct: 76  RELARVNGIQPPHVIYPGQKIRF---------DGGSSRVASAAPRPAPQPAPAPAPSSPV 126

Query: 128 VAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPS 187
           V  T                      + P  T   +      +P      +  V    P 
Sbjct: 127 VVATP-------------------IPRQPAITTPSS------QPPAAPPASTQVT---PV 158

Query: 188 DEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNL 247
               + W WP  G +I  FS+    NKGIDIAG+ GQ V+A +DGTVVY+G+ LRGYG L
Sbjct: 159 ARSASGWAWPANGAIIGRFSSNGSLNKGIDIAGELGQPVLAASDGTVVYAGSGLRGYGEL 218

Query: 248 IIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPK 307
           +IIKH++ Y+SAY HN +LL +EGQ V+AGQ IA MGS+GT+ V+LHFEIR QGK V+P 
Sbjct: 219 VIIKHSDTYVSAYGHNRRLLVREGQQVKAGQSIAEMGSTGTDRVKLHFEIRRQGKPVDPL 278

Query: 308 RYLP 311
           +YLP
Sbjct: 279 QYLP 282