Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., Peptidoglycan-binding LysM:Peptidase M23B from Pseudomonas syringae pv. syringae B728a

 Score =  182 bits (463), Expect = 6e-51
 Identities = 115/297 (38%), Positives = 158/297 (53%), Gaps = 38/297 (12%)

Query: 16  LLFGCTAPTPAPVSGLGKDYNKV-ERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYN 74
           LL GC++     V  + ++ N V +R +     Y V++GDTL+ IA+    D   L + N
Sbjct: 27  LLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQYVVRRGDTLFSIAFRYGWDWKALAARN 86

Query: 75  DLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSK 134
            +  P+TI PGQ I+    + + P    T GA     ++STS                  
Sbjct: 87  QIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGRPVTSTSTST----------------- 129

Query: 135 SSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKW 194
                    GS+ S        VKT   +K    V  V   +         P+ +    W
Sbjct: 130 ---------GSSGS--------VKTTVMSKPVAVVPVVIPPSATTGTG---PAGKSPTGW 169

Query: 195 LWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNE 254
            WP+ G +I  FS+    NKGIDIAG  GQ V+A +DG+VVY+G+ LRGYG LIIIKH++
Sbjct: 170 TWPSSGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSD 229

Query: 255 HYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
            Y+SAY HN +LL +EGQ V+AGQ IA MGS+GT+ V+LHFEIR QGK V+P  +LP
Sbjct: 230 TYVSAYGHNRRLLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLP 286