Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., Peptidoglycan-binding LysM from Synechococcus elongatus PCC 7942

 Score =  111 bits (277), Expect = 5e-29
 Identities = 97/313 (30%), Positives = 147/313 (46%), Gaps = 57/313 (18%)

Query: 48  YEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAA 107
           Y V+ GD+L  IA     D+ DL+  N L+ P  I  GQ++ +      PPA  G    A
Sbjct: 284 YTVQPGDSLSRIATRFGLDLQDLLQVNRLSNPNLIFVGQRLTI------PPA--GQARLA 335

Query: 108 TVA---------VASSTSASVAKAATTATVAQTVSKS------SNTKNVQNGS------- 145
            VA         V   TS+ +A    +   A+   +S      SN K++   +       
Sbjct: 336 PVATLPPLLRQQVTEDTSSRIAANLGSGLNAELTIESLSSPPPSNLKSLDITAQTSFSGP 395

Query: 146 --TNSQNLT----KKDPVKTVDQTKTKEYVEPVGKQN--------VNVNVAKAKPS---- 187
             ++S++LT       P K       K  V P+G +N        +   VA   PS    
Sbjct: 396 SLSSSRSLTPALPSATPFKPQQPEPDKVAVAPLGSENYEPLLASLLKTAVAPELPSLNSD 455

Query: 188 ------DEKIAKWLWPTKGRVIKNFS-AGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA 240
                  ++ A ++WP +G +   +     + ++GIDIAG  G  ++A A G VV +G  
Sbjct: 456 ELLPGGGDRFAGYIWPARGILSSGYGWRWGRMHRGIDIAGPVGTPILAAAPGVVVTAGWN 515

Query: 241 LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSG-TNSVRLHFEIRY 299
             GYGNL+ I+H    L+ YAHN+++L + G+ VQ GQ +A MGS+G +    LHFE+  
Sbjct: 516 SGGYGNLVEIQHPNGSLTLYAHNNRILVRPGERVQQGQIVAEMGSTGRSTGPHLHFEVHP 575

Query: 300 QGK-SVNPKRYLP 311
           +G  +VNP  YLP
Sbjct: 576 RGNGAVNPIAYLP 588



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 48  YEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPA 99
           + V+ G+TL+ IA      V  L++YN L    T+   Q + L  P    PA
Sbjct: 146 HRVQPGETLWSIARAHGLTVAQLLTYNQLTEGTTLRVDQVLNL-QPKAVEPA 196