Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., lipoprotein from Sinorhizobium meliloti 1021

 Score =  105 bits (263), Expect = 2e-27
 Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 40/278 (14%)

Query: 36  NKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNY 95
           N    G   G+Y  VK GD+L  IA      V  L   N L+    I  GQK+ +     
Sbjct: 271 NSAGEGGGNGAY-TVKPGDSLNRIAKANGVSVAALKQANGLSTE-AIRIGQKLNI----- 323

Query: 96  TPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKD 155
                               SAS    AT A V  +VS   N    Q  ST    LT   
Sbjct: 324 -------------------PSASAKTPATDAVVTASVSAKKN--EAQAASTEQGKLT--- 359

Query: 156 PVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNK- 214
                 +TK     E V +  +  +  +  P    I K+ WP +G V+  + A   GN+ 
Sbjct: 360 ------ETKAPAAKESVSEVAIRSDGNEDLPKSTGIGKYRWPVRGAVVAAYGANVDGNRN 413

Query: 215 -GIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQT 273
            GI+I+   G  + A  +G V+YSG++L+  GN ++++H++  ++ Y +  +L  + GQ 
Sbjct: 414 DGINISVPEGTPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQK 473

Query: 274 VQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPKRYL 310
           VQ GQ +A+ G +G     ++HFE+R     VNP  YL
Sbjct: 474 VQRGQTLASSGMTGRATRPQVHFEVRKNATPVNPATYL 511



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 31/183 (16%)

Query: 23  PTPAPVSGLGKDYNKVERGSYRGSYYE---VKKGDTLYFIAYLTDKDVNDLISYNDLAPP 79
           P   P++G  KD +   +G +  S      V++GDT+  +A        +++  N L   
Sbjct: 140 PKAEPLAGAAKDMSG--KGGWSASNAPTIMVRQGDTVTVLARRFGVPEKEILKANGLKSA 197

Query: 80  YTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASV--------------AKAATT 125
             + PGQ  +L +P +      GT G+A  A AS + A V               + A  
Sbjct: 198 SQVEPGQ--RLVIPTF------GTAGSAAKAAASGSIADVEGGKKRPSPLPTDQREVAIL 249

Query: 126 ATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAK 185
              +Q+  KS +  +V  G  NS      +   TV   K  + +  + K N  V+VA  K
Sbjct: 250 PGQSQSREKSESRSDVAAGKLNSAGEGGGNGAYTV---KPGDSLNRIAKAN-GVSVAALK 305

Query: 186 PSD 188
            ++
Sbjct: 306 QAN 308