Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., lipoprotein NlpD (RefSeq) from Shewanella amazonensis SB2B

 Score =  221 bits (563), Expect = 2e-62
 Identities = 135/309 (43%), Positives = 173/309 (55%), Gaps = 21/309 (6%)

Query: 7   RLGLLLFCSLLF-GCT--APTPAPVSGLGKDYNKVE-RGSYRGSYYEVKKGDTLYFIAYL 62
           RL     C LL  GC+  A +PAPV  L      V  +GS   S Y+VKKGDTLY IA+ 
Sbjct: 3   RLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIAWG 62

Query: 63  TDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKA 122
              D ++L   N L  PYTI PGQ +KL            +  A        T+ + +K 
Sbjct: 63  AGTDYHELAKINQLNKPYTIFPGQVLKL------------SSTAKNTKPTKQTTTASSKP 110

Query: 123 ATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVA 182
              +  A+   K S +  V +G   S  + +K   KT+D     +Y     +Q  N    
Sbjct: 111 DPKSVTAKNDKKQSASPVVSSGQ--SSVVAQK---KTLDPKNKADYAVTSSQQGDNPVAT 165

Query: 183 KAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALR 242
                  ++A+WLWP KGR+I  FSA +QG+KGI IAG+RG  V A A+G VVYSGNALR
Sbjct: 166 ATDGLPNEVARWLWPAKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALR 225

Query: 243 GYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGK 302
           GYGNL+IIKH+E +LSAYAH D++L  E Q V AGQ +ATMG++    V LHFEIR  G 
Sbjct: 226 GYGNLVIIKHSEDFLSAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGV 285

Query: 303 SVNPKRYLP 311
           SVNP +YLP
Sbjct: 286 SVNPLKYLP 294