Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., peptidase M23B (NCBI) from Rhodospirillum rubrum S1H

 Score =  127 bits (319), Expect = 5e-34
 Identities = 89/245 (36%), Positives = 122/245 (49%), Gaps = 20/245 (8%)

Query: 77  APPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAV-ASSTSASVAKAATTATVAQTVSKS 135
           APP + H      +W+      A GG   A + A  A + S S A+ A  A+ AQ V+ S
Sbjct: 222 APPASPHAAPT-SVWV------APGGPAAAPSPATQAPAGSPSPAQGANGASPAQGVTGS 274

Query: 136 SNTKNVQNGSTNSQNLT-------KKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSD 188
           S  +     S+ +Q  T          P  T           PV       +     P  
Sbjct: 275 SPAQGA-TASSPAQGATGVLRPPPSAAPPLTTQPAPPMAAPAPVSPTPATAHGPVPTPP- 332

Query: 189 EKIAKWLWPTKGRVIKNFSAGDQG--NKGIDIAGQRGQAVVATADGTVVYSGNALRGYGN 246
           E+   + WP +G V+  F A  +G  N GI+IA  RG  V A   G V Y+GN +RG+GN
Sbjct: 333 ERSGAFAWPVRGTVLSGFGATPKGQHNDGINIAAPRGTPVTAAETGVVAYAGNEIRGFGN 392

Query: 247 LIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSS-GTNSVRLHFEIRYQGKSVN 305
           L++IKH   +++AYAHND LL K G+TV  GQ IA +GSS G  + ++HFEIR  GK ++
Sbjct: 393 LLLIKHEGGFMTAYAHNDALLVKRGETVSRGQTIARVGSSGGVGAPQIHFEIRRNGKPID 452

Query: 306 PKRYL 310
           P  YL
Sbjct: 453 PTPYL 457



 Score = 37.0 bits (84), Expect = 9e-07
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query: 26  APVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPG 85
           A   G   D+        +   Y V +GDT+Y ++      V  +I  N L+PP+ +H G
Sbjct: 57  ASCGGGSSDFGPTPDSERQARSYTVAQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIG 116

Query: 86  QKIKL 90
           Q ++L
Sbjct: 117 QVLRL 121