Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., peptidoglycan DD-metalloendopeptidase family protein from Rhodopseudomonas palustris CGA009

 Score =  126 bits (316), Expect = 1e-33
 Identities = 91/292 (31%), Positives = 130/292 (44%), Gaps = 30/292 (10%)

Query: 22  APTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYT 81
           AP  AP++                  + V  GDTL  IA   +  + +L  YN+L     
Sbjct: 204 APVAAPMAAPPAPRPVATAAPAPARVHYVNNGDTLMNIARRNNISLGELARYNNLTTTTK 263

Query: 82  IHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNV 141
           + PG KI     N       G   A     A + +   A     A VA TV      K  
Sbjct: 264 LKPGMKI-----NVPGAQVAGLAPAQPPIQAPAAAPMAAPQVRMANVAPTVPAEPPQK-- 316

Query: 142 QNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGR 201
                           + V  T+T E   P     V     K+  +   +  + WP +GR
Sbjct: 317 ---------------ARMVAPTETPEAAAPAEAAPV-----KSAEATGALPSFRWPARGR 356

Query: 202 VIKNFSAGDQG--NKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSA 259
           VI  + A   G  N GI+++   G  V A  DG V Y+G+ L+GYGNL++I+H+  Y+SA
Sbjct: 357 VIAAYGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKGYGNLVLIRHSNGYVSA 416

Query: 260 YAHNDQLLAKEGQTVQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPKRYL 310
           YAH  +L+ K G+T++ GQ IA  G SG  +S +LHFEIR     V+P ++L
Sbjct: 417 YAHASELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFL 468