Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., peptidoglycan DD-metalloendopeptidase family protein from Pseudomonas sp. BP01

 Score =  186 bits (471), Expect = 7e-52
 Identities = 110/296 (37%), Positives = 155/296 (52%), Gaps = 39/296 (13%)

Query: 16  LLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYND 75
           LL GC++ +      + ++    +R +     Y VK GDTL+ IA+    D  +L + N 
Sbjct: 27  LLVGCSSTSNTSARVVDRNNTVPKRPTVTSGQYIVKPGDTLFSIAFRYGWDYKELAARNG 86

Query: 76  LAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKS 135
           +  PYTI PGQ I+             +G +++  V S+ S+S     T   V  T +  
Sbjct: 87  IPAPYTIRPGQAIRF-----------SSGSSSSTTVVSNPSSSSRTTVTRRPVGSTPTSP 135

Query: 136 SNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWL 195
           ++T     G   +       PV                       VA    ++  +  W 
Sbjct: 136 AST-----GKPATPAPITSAPV-----------------------VATVPAAERAVGGWT 167

Query: 196 WPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEH 255
           WP  G +I  F++    NKGIDIAG  GQ V A +DG VVY+G+ LRGYG LIIIKH++ 
Sbjct: 168 WPANGVLIGKFASNGSLNKGIDIAGDLGQPVFAASDGAVVYAGSGLRGYGELIIIKHSDT 227

Query: 256 YLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
           Y+SAY HN +LL +EGQ V+AGQ IA MGS+GT+ V+LHFEIR QGK V+P ++LP
Sbjct: 228 YVSAYGHNRRLLVREGQQVKAGQSIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLP 283