Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., putative peptidoglycan binding peptidase from Phaeobacter inhibens DSM 17395

 Score = 80.9 bits (198), Expect = 5e-20
 Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 42/266 (15%)

Query: 48  YEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAA 107
           ++VK+G+T Y ++ L    V  L  +N L   + I  GQ + + L +   P    +  AA
Sbjct: 181 HKVKRGETAYTVSRLYQVPVKALAEWNGLGSDFAIREGQFLLIPLKDRPAPRKEASA-AA 239

Query: 108 TVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKE 167
             AVA+ T+     +  T   A                      TK  P +TV      E
Sbjct: 240 VPAVATVTAPGEGTSTPTPPSA----------------------TKPLPQETV--APAAE 275

Query: 168 YVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVV 227
             + + K  V        P+    +   +P KG++ + +S G   N GIDIAG  G  V 
Sbjct: 276 APKDLPKVEVPA------PTRSSSSAMSYPVKGKITRTYSKGK--NDGIDIAGAAGAPVQ 327

Query: 228 ATADGTVVYSGNALRGYGN---LIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMG 284
           A   GTV     A+    N   +I+I+H+   L+ YA+ D++   +G TV  GQ IA + 
Sbjct: 328 AADGGTVA----AITKDSNNIPIIVIRHDAKLLTVYANVDKIAVNKGDTVSRGQTIAALR 383

Query: 285 SSGTNSVRLHFEIRYQGKSVNPKRYL 310
                S  +HFE+R   +SV+P  YL
Sbjct: 384 DG--PSAYVHFEVRNGFESVDPLPYL 407