Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., peptidase M23B (RefSeq) from Shewanella loihica PV-4

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 14/157 (8%)

Query: 160 VDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIA---KWLWPTKGRVIKNFSAGDQGN--- 213
           +++   K  VE        +   K  PS E ++   K  WPTKGR+   F +   G    
Sbjct: 209 IEEASLKRVVEQA------LRAMKDNPSMEGLSSRQKLSWPTKGRIRAGFGSLRSGEVKW 262

Query: 214 KGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQT 273
           KG+ +A   GQ++ A A G V+Y+ + LRG+G ++++ H + Y+S Y H   LL   G +
Sbjct: 263 KGVMMAAPEGQSINAIASGKVIYA-DWLRGFGMVMVVDHGKGYMSLYGHAQTLLKDAGDS 321

Query: 274 VQAGQKIATMG-SSGTNSVRLHFEIRYQGKSVNPKRY 309
           V+ G+ IA +G S G     L+FE+R++G++V+P RY
Sbjct: 322 VKKGETIALVGRSGGQTEPGLYFEVRHKGQAVDPARY 358