Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., peptidase M23B (RefSeq) from Shewanella loihica PV-4

 Score =  234 bits (598), Expect = 1e-66
 Identities = 132/309 (42%), Positives = 178/309 (57%), Gaps = 26/309 (8%)

Query: 12  LFCSLLFGCT-------APTPAPVSGLGKDYNKV-ERGSYRGSYYEVKKGDTLYFIAYLT 63
           + C+LL  C        A +PAPV  +     K  ++G     +Y+VK+GDTLY IA+  
Sbjct: 17  ILCALLLSCLLSACSFQAHSPAPVVNVNSPVKKAYKKGGLTSDHYKVKRGDTLYSIAWAA 76

Query: 64  DKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAA 123
           +KD  ++  YN L  PYTI+PGQ +KL   N            A     +  S  V+   
Sbjct: 77  NKDFAEIARYNGLRKPYTIYPGQVLKLKSTN------------AVTNSKTQRSTQVSSKK 124

Query: 124 TTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAK 183
           T    A+   K +   + Q  + +   L KK    ++D+     Y    G+QNVN  + K
Sbjct: 125 TQQNTAKNQPKQT-VNSSQQAAASKTALAKK----SLDRGDKSAYAVTTGQQNVNGVIHK 179

Query: 184 AKPS-DEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALR 242
              +  +K+ +W WP KG++I  FS  +QGNKGI IAG RG  + A ADG VVY+GNALR
Sbjct: 180 PSSTLPKKVQRWHWPVKGKLIGTFSTKEQGNKGIKIAGSRGDRIQAAADGRVVYAGNALR 239

Query: 243 GYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGK 302
           GYGNL+IIKH++ YLSAYAH D++L KE Q V AGQ +A MG +GTN V LHFEIRY GK
Sbjct: 240 GYGNLVIIKHSDDYLSAYAHADKILVKEKQFVTAGQTVAKMGQTGTNRVMLHFEIRYHGK 299

Query: 303 SVNPKRYLP 311
           SV+P ++LP
Sbjct: 300 SVDPLKFLP 308